Embedding AI in biology — part 2
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Benchmarking biomedical foundation models
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EvalDetectBench: A Benchmark for Measuring Evaluation Awareness in Frontier Language Models
arXiv:2609.01611v1 Announce Type: new Abstract: Frontier large language models can often recognize when they are being evaluated, a capability known…
Rethinking Learnability in Offline Data-driven Optimization
arXiv:2609.01493v2 Announce Type: replace-cross Abstract: Black-Box Optimization (BBO) has broad applications, while traditional algorithms such as evolutionary algorithms and Bayesian…
Spectral Initialization and Scheduled Graph Smoothness for Uncertain Knowledge Graph Completion
arXiv:2609.02519v1 Announce Type: cross Abstract: Uncertain knowledge graphs (UKGs) extend knowledge graphs by assigning each triple a continuous confidence score.…
Blending Concepts: Benchmarking Visual Metaphor Generation in Text-to-Image Models
arXiv:2609.02502v1 Announce Type: cross Abstract: Text-to-image (T2I) models have achieved remarkable success at faithfully rendering specified objects and attributes, yet…
Towards Effective Structured Context Modeling for Conversational Recommender Systems via Dual-node Monte Carlo Tree Search
arXiv:2609.00618v2 Announce Type: replace-cross Abstract: We investigate the role of conversational context modeling in user preference tracking for Conversational Recommendation…
NucleicBERT interprets RNA sequence space through self-supervised language modelling
Nature Machine Intelligence, Published online: 03 September 2026; doi:10.1038/s42256-026-01295-9 RNA structure and function are hard to infer because annotations are…
Quantum neural operators with implicit quadratic frame and expressivity advantages
Nature Machine Intelligence, Published online: 03 September 2026; doi:10.1038/s42256-026-01289-7 Wang et al. introduce a hardware-efficient quantum neural operator that overcomes…
HyperWorld: Hypergraph-Structured State Serialization Improves Learned Textual World Models
arXiv:2609.00002v1 Announce Type: new Abstract: World models enable language-model agents to predict environment dynamics and plan before acting. In text…